Package: TaxaNorm
Title: Feature-Wise Normalization for Microbiome Sequencing Data
Version: 2.3
Authors@R: c(
      person("Ziyue", "Wang", email = "wangziyue57@gmail.com", role = c("aut")),
      person("Dillon", "Lloyd", email = "dtlloyd@ncsu.edu", role = c("aut","cre","cph")),
      person("Shanshan", "Zhao", email = "shanshan.zhao@nih.gov", role = c("aut","ctb")),
      person("Alison", "Motsinger-Reif", email = "alison.motsinger-reif@nih.gov", role = c("aut","ctb")))
Maintainer: Dillon Lloyd <dtlloyd@ncsu.edu>
Description: A novel feature-wise normalization method based on a
        zero-inflated negative binomial model. This method assumes that
        the effects of sequencing depth vary for each taxon on their
        mean and also incorporates a rational link of zero probability
        and taxon dispersion as a function of sequencing depth. Ziyue
        Wang, Dillon Lloyd, Shanshan Zhao, Alison Motsinger-Reif (2023)
        <doi:10.1101/2023.10.31.563648>.
License: GPL-3
Depends: R (>= 4.0.0), microbiome,
Imports: phyloseq, stats, S4Vectors, BiocGenerics, vegan, methods,
        MASS, future, future.apply, matrixStats, pscl, parallelly,
        ggplot2, utils
URL: https://github.com/wangziyue57/TaxaNorm
biocViews: Sequencing, Microbiome, Metagenomics, Normalization,
        Visualization
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
BugReports: https://github.com/wangziyue57/TaxaNorm/issues
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://wangziyue57.r-universe.dev
Date/Publication: 2025-11-19 17:51:23 UTC
RemoteUrl: https://github.com/wangziyue57/taxanorm
RemoteRef: HEAD
RemoteSha: 4cf01e5c2b1ef3f39ac75051ba9c60b42d556357
NeedsCompilation: no
Packaged: 2026-06-17 08:55:58 UTC; root
Author: Ziyue Wang [aut],
  Dillon Lloyd [aut, cre, cph],
  Shanshan Zhao [aut, ctb],
  Alison Motsinger-Reif [aut, ctb]